RnoALTD0034456-4/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000019376 | Zfp329
Description
zinc finger protein 329 [Source:RGD Symbol;Acc:1565029]
Coordinates
chr1:65781459-65800492:+
Coord C1 exon
chr1:65781459-65781559
Coord A exon
chr1:65781560-65781995
Coord C2 exon
chr1:65791823-65800492
Length
436 bp
Sequences
Splice sites
5' ss Seq
TAGGTGATT
5' ss Score
4.02
3' ss Seq
GTCTTTTTCTTTCTTTTCAGTAT
3' ss Score
11.25
Exon sequences
Seq C1 exon
CATAGCGGTCAAGGCTGCTTAATCTTCAGGACGCGTGCGCGTCACAGGATCGGCGTCTGCGCACGCGCAGTTGCTGCAAATATGGCCACCACCGGCAACCT
Seq A exon
GTAGTGAGTCCTTCCGCACCTCGGCACCTTTCTGTTTCTTAGTTACCCCTCTGAGTGTCTAGCGGGAGGGAGTCGATGGGGTGTTGGAGGGGTGGCGTGCAGAGCGTCTGCGTCGGGTTTCACGCGGACTGTGGGAGTTTCGGGCTCACCCAGAGGGTGTGAGCGACAACACCGCTGTCCTCACGGGTGTGCACGCCCCCGGGTCGGAGGGATTCCTGTCTGGCTGGTGTAGACGCTCCTCCGCTCTTCTATCGGGTGAGACTGTCTCGCTCTTTCCGGCGCGTTACTTATGGCGTCCTTGTCTCGAGCCCGGCGGTTCTCGGAGGTTTTGCCGAGATCCTTTGGGCGCCTGGGCCCTTCAGATTTGCCGGTTTCGGGCCGAGTTGGCTGCCGGGCTCCAATGAGCGGCGGGGCTGTTTTCCGTGGAATCTTCTAG
Seq C2 exon
TATGGAACATGAGACTGAAAATAATAGCTCAGAATGTTCCTGAAGAAGAAAGTGTTTCCTTTGAGGTAGAAATGGAAGGATTTACAAGAGAGGGTCCCTGCTTCCCCATTTTAGGCGACAATTGGGACTGTGAGAACCAGGAAAGAAATTCAAGGCAGTCTCCTTTAATTGATGAGAAAACAGAGGCTCAGGAAGCAAATTGTGACCATCATAATTTGGGGGAACATTTGAGTACAAACCCAGCCCTTCTAGCATCTCAGAGAGTTCCTACAACAAACAGCTTCCATGTTCCTAACTCAGATATTAAAACTTTTGATTGTGACCAAACCTTACATAGTTGCCCCCAGAATTATACATTTAAGGGAACTGGTGATGATGATGCTTGTGAAAAAGCCATCCATCCTTCCATGGAAGTCACTCAACTTGTAAGAAACCAAACGAGAGATAAACCCTATAAATACGCAGAAAGTATTAAATCTATAAACCACTTTACCACTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019376-0-0,1-0,2-0,3-0-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF097235=Zn-ribbon_8=WD(100=7.9),PF138941=zf-C2H2_4=WD(100=4.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTCAAGGCTGCTTAATCT
R:
AGATGCTAGAAGGGCTGGGTT
Band lengths:
354-790
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]