RnoALTD0034486-4/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000048101 | Zfp397
Description
zinc finger protein 397 [Source:RGD Symbol;Acc:6504280]
Coordinates
chr18:15856896-15858907:+
Coord C1 exon
chr18:15856896-15856996
Coord A exon
chr18:15856997-15857176
Coord C2 exon
chr18:15858411-15858907
Length
180 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
3' ss Seq
AATGCTTTCATGTATTGTAGGAA
3' ss Score
9.66
Exon sequences
Seq C1 exon
CTGAAGAGACCCCTCGACCGCCGCTTTCCGCTGGACAACCCCCGTGGTGCCCCTTCTGGCACGCGCCTACTCTGTGCTTTAACCCGGAAGCTAAAAATAAG
Seq A exon
GTGCGTTGCGGCGAAGGTGTGGGGCGGGTGTCTTGTTAGCCGGTATGGGTAGCAGTGGTGTCAGCTCTTGGGATCCTTTCACTTGGGACTGAGGTAGAGGGAGGGAGCGGACCGAGCGACTGAGAAGCGCAGGGCGAGCGGGTCAGCGTCTGGGTGAGAGCCGCTTGAACGCCGCGCCAG
Seq C2 exon
GAAAGAAGAGGTTACTTGGGAAACTCCTCCCCAAGCACAAAACCCAACTGTACTAAGCTTTTTGTGAGCTATTTCAGCCCAGAATGGCTATGGAATCCAGAGCAATTTCAACTTTAAAACCTCAGGATCATCAAGAAGAATTAATACTCGTGAAAATAGAAGACAGCAGCTTTTCTTGGAGCCAGAAATGTAAACAGAATGGGAGTGCCCAGTCTTGCCAAGAACTGTTTCGCCAGCAATTCAGGAAGTTTTGCTATCATGAAACACCTGGGCCCCGAGAGGCTCTGGGAAGACTCCAGGAACTCTGCCATCAGTGGCTAATGCCAGAGTTGCACACAAAGGAGCAGATCCTGGAACTGCTAGTGCTGGAGCAGTTCCTGAGCATCCTCCCTGAAGAGCTGAAGATATGGGTTCAACAGCACGGCCCAAAGAGCGGTGAGGAAGTTGTGACTCTGCTGGAAGATTTGGAGAAAGAGTTTGATGATCCAGGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048101-1-0,2-0,3-0,4-0-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.109
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=68.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCTTTAACCCGGAAGCT
R:
ACAGTTCTTGGCAAGACTGGG
Band lengths:
258-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]