RnoALTD0034490-1/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000043357 | Zfp407
Description
zinc finger protein 407 [Source:RGD Symbol;Acc:1310645]
Coordinates
chr18:81170024-81199159:-
Coord C1 exon
chr18:81199060-81199159
Coord A exon
NA
Coord C2 exon
chr18:81170024-81170202
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
3' ss Seq
TTTCCTTTCTTACTTGATAGGTC
3' ss Score
11.3
Exon sequences
Seq C1 exon
GGGAAAAGCCTTTCAAATGTGATGAGTGTAACTTCGCCTCCACAACCCAGTCACACTTGACTCGGCATAAGCGTGTGCACACTGGAGAGAAGCCATACAG
Seq A exon
NA
Seq C2 exon
GTCAAACTGTGCTGAGAATATCCGCAAACACATTTTACACACCGGCAAACATGAAGGCGTCAAGATGTACAACTGCCCAAAGTGTGACTATGGGACGAATGTCCCCGTGGAATTCCGGAACCACTTGAAGGAGCAGCATCCTGACATTGAGAACCCTGACCTCGCATACTTGCATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043357-12-15,13-15,14-15-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=NA C2=0.230
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=36.6),PF134651=zf-H2C2_2=PU(84.6=53.7)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(11.5=4.9),PF139091=zf-H2C2_5=WD(100=41.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGACTCGGCATAAGCGTGT
R:
CTTGACGCCTTCATGTTTGCC
Band lengths:
109-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]