RnoALTD0034498-2/6 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000013379 | Zfp422
Description
zinc finger protein 422 [Source:RGD Symbol;Acc:620229]
Coordinates
chr4:148757363-148761612:-
Coord C1 exon
chr4:148761512-148761612
Coord A exon
chr4:148761343-148761511
Coord C2 exon
chr4:148757363-148759535
Length
169 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TTTTTCTTTTTCTTCTACAGAAA
3' ss Score
12.56
Exon sequences
Seq C1 exon
GGTGGGGAGAATCTAACAAAGGCCAATTTCTGTGTAGCTCGACCGGAATAGAAAGAGAGCGGGTACTTGGCCTTGCGGTCCGTGGGTCTGCCTTCTGAGTG
Seq A exon
GTAAGCGAGGAATACAAAAGGACCGCCTAAAGAAGCCGCAGGACTCGGTGGGCTGGGCTGGGGACCATAGAGGGTCTCTCCGCCTCTTCCTAGAGCGGCCCGCAGCTCCGCTAGGAGCTCGCACTTCCGGCGGGCGAGGCGGGAGGCGAGCACCGTGGCGGCCTGCACG
Seq C2 exon
AAAATTCTGAGTTGCGTTACTCTAGGATATGAGACCTTAGTTCAGAAGTTCAGAAGACAGTACAATCTCTTGTCAGTACATTTGGCTGCTCACCATGAGGTTAGGAAAGCCTAAGGGGGGTATTTCTCGAAGTGCAAGCCAAGGAAAAACCTATGAGAGCAAGCGCAAGACAGCCCGCCAGCGACAGAAATGGGGGGTGGCCATTCGCTTCGACTCAGGGTTAAGTAGACGGAGAAGAAACGTGGATGAGAAGCCTTACAAATGTACTAAATGTTCTAAGAGTTTCAGTCAGAGCTCCACTCTTTTTCAGCACAAGAAGATCCACACTGGGAAGAAATCCCATAAATGTGCCGATTGTGGGAAAAGTTTCTTTCAGAGTTCTAACCTCATTCAGCATCGGCGGATCCACACGGGGGAAAAGCCCTATAAGTGCGACGAGTGTGGAGAGAGATTTAAACAGAGCTCCAACCTTATCCAGCACCAGAGGATTCACACCGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013379-1-0,2-0,3-0,4-0,5-0,6-0-2/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=9.7),PF134651=zf-H2C2_2=WD(100=10.9),PF134651=zf-H2C2_2=WD(100=10.9),PF134651=zf-H2C2_2=WD(100=10.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGTAGCTCGACCGGAAT
R:
CTTGCGCTTGCTCTCATAGGT
Band lengths:
242-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]