RnoALTD0034556-3/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000024065 | Zfp575
Description
zinc finger protein 575 [Source:RGD Symbol;Acc:1305025]
Coordinates
chr1:81449627-81450112:-
Coord C1 exon
chr1:81450012-81450112
Coord A exon
chr1:81449927-81450011
Coord C2 exon
chr1:81449627-81449730
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCTTTCGTCTTTTTCTCCAGGTT
3' ss Score
12.18
Exon sequences
Seq C1 exon
TGGGAGGAGGGGATGGAAGTGAAGCTGGGCCCCAAGGCTCGGCAAGCTCCTTCCCGCTCTTCTCTCCTCCAGCGACGTCCCAGCGCCCGCTGGGAGTGCAG
Seq A exon
GTCGGAGGGCTACAAGGTAGCTCCTGAGGCTTAACTGAGACGGGAGGGTTCCGGAGCCCCACCCCCGGGAGGGACCGCCCTGCAG
Seq C2 exon
GTTTCCCTAATCCTCCGAGCTCCCCAATTCTATGCCAGAGATGCGATTTAGCGACCAGAAGGACAGGGTGGACACAGCATCAGTAGGCTGAGACTAAAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024065-0-0,1-0,2-0,3-0-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAGGGGATGGAAGTGAA
R:
CTGTGTCCACCCTGTCCTTCT
Band lengths:
176-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]