RnoALTD0034600-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000033906 | Zfp667
Description
zinc finger protein 667 [Source:RGD Symbol;Acc:1359114]
Coordinates
chr1:71283019-71286213:-
Coord C1 exon
chr1:71286087-71286213
Coord A exon
NA
Coord C2 exon
chr1:71283019-71283111
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
GGTATTTGTCCCATGTGTAGGAC
3' ss Score
5.81
Exon sequences
Seq C1 exon
GCACCAGTGACTTTTGGGGACTTAGCCATCTACTTCTCACAGGAGGAATGGGAATGGCTGAGTCCCAATCAGAAGGATTTGTACGAAGATGTCATGTTGGAGAACTATCACAATCTGGTCTCAGTTG
Seq A exon
NA
Seq C2 exon
GACTTGCCTGCCGGAGGCCAAATATCATCGCCTTGTTGGAGAAAGGGAAAGCACCATGGATGGTGGAGCCATCAAGAAAGCGCCGGGGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033906-5-4,6-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.375
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGAGTCCCAATCAGAAGG
R:
GCGATGATATTTGGCCTCCGG
Band lengths:
103-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]