RnoALTD0034630-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000014278 | Zfp710
Description
zinc finger protein 710 [Source:RGD Symbol;Acc:1306491]
Coordinates
chr1:141768339-141861659:+
Coord C1 exon
chr1:141768339-141768409
Coord A exon
chr1:141768410-141768417
Coord C2 exon
chr1:141860171-141861659
Length
8 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
TCTTCCCTTTTCTCTTACAGAAA
3' ss Score
12.65
Exon sequences
Seq C1 exon
GTGTGCAGAGGACTTTGTGCTGTTGGGGGTCATCCAGCCAGCTTTGACGCTGCCCTCTCAGCCTTGCCTTT
Seq A exon
GTATGTGT
Seq C2 exon
AAATGCCCTCGTAGCCAGACCCCACGGGATGGAGGGCTTCATGGACTCAGGGACACAGACGGATGCTGTGGTGGTGCTGTCCTTGGCTCAGGCTGCTGTGCTGGGCCTGGTCTCAGAAAATGAGCTCTTTGGAGCCACCATAAGTGCAGAGGCCTTTTACCCAGACCTGGGGCCAGAACTGTCTGGGACAGCCATGGGGGAGCCAGGACCACCAGGGCCTGACATCTATCAGCTGGCCTGTAATGGGCAGGCCCTGGAAGAGCCCCCAGAAGAGGAGGTGCTGGAGGTAGAGGCCGCCTTTGAGAAGCACACCCGGAGGAAGACACGGCCCCCTGTGAGGCTGGTACCCAAGGTCAAGTTTGAGAAGGCAGAAGACGAAGAGGAACAGGAGGTGTATGAGGTGTCTGTGCCCGGGGATGACAAAGACCCGGGCCCTGCAGAGGCCCCTGAGGAGGCGGCCAGTGGTGGCTGTGAGGCCCTGGTGCAGAGCAGTGCCGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014278-4-2,5-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.433
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=PU(36.0=1.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTGCTGTTGGGGGTCATC
R:
TGAGTCCATGAAGCCCTCCAT
Band lengths:
107-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]