RnoALTD0034641-1/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000032552 | Zfp799
Description
zinc finger protein 799 [Source:RGD Symbol;Acc:1359692]
Coordinates
chr7:15072633-15073063:-
Coord C1 exon
chr7:15072963-15073063
Coord A exon
NA
Coord C2 exon
chr7:15072633-15072693
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGATG
5' ss Score
4.44
3' ss Seq
TTTCTTGCCCTGTATTTTAGGAA
3' ss Score
11.21
Exon sequences
Seq C1 exon
TGCTTTTTTAGGAGCCAGTGACCTTGGAGGATGTGGCTGTGGACTTCACCCTGGAAGAGTGGACTATGCTGAACTTATGGCAAAAGCAGCTCTACAAAGAG
Seq A exon
NA
Seq C2 exon
GAAACAAACAGGAACACCAAAATATTGAAAATGAGTATGAAAATCTCTGGAAAAAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032552-0-2,1-2,2-2,3-2-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGAGCCAGTGACCTTGGAG
R:
TCAATATTTTGGTGTTCCTGTTTGT
Band lengths:
121-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]