RnoALTD0034649-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000024693 | Zfp831
Description
zinc finger protein 831 [Source:RGD Symbol;Acc:1565819]
Coordinates
chr3:172734954-172786716:+
Coord C1 exon
chr3:172734954-172735035
Coord A exon
chr3:172735036-172735082
Coord C2 exon
chr3:172786616-172786716
Length
47 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TTCTTTTTTTCGGAGCTGAGGAC
3' ss Score
-4.89
Exon sequences
Seq C1 exon
GGAGTTTCTGGCAGAGAGCCAAACGACTGTGCAAGCCACCCTGGTTGCCGAGAAGAAGCTGTCTCCCCCACCGACTTGAGGG
Seq A exon
GTTAGAGCCACGGGGGACCTTTGGGAGGAGTTCAGCAGAAGCGTCAG
Seq C2 exon
GACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACTACTGAGCTAAATCCCCAACCCCTATGCNNNNNNNNNNNNNNNNNNNNNNNNNAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024693-7-8,8-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.320 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCCAAACGACTGTGCAA
R:
AGGGGTTGGGGATTTAGCTCA
Band lengths:
135-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]