RnoALTD0034657-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000030517 | Zfp879
Description
zinc finger protein 879 [Source:RGD Symbol;Acc:1563273]
Coordinates
chr10:36335633-36336613:-
Coord C1 exon
chr10:36336513-36336613
Coord A exon
NA
Coord C2 exon
chr10:36335633-36335699
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
AGCTTCTTTCTCTGCCTCAGGTG
3' ss Score
9.28
Exon sequences
Seq C1 exon
GGCATTGAGCTTATTGGGCTTTCTGGTAGAGCTGGCACGGCCGGGAGCCTACCGGGTAGGGCTGCGGACCTGGCGGGAGCGCGCTGAGGCTTCGGCGGCAG
Seq A exon
NA
Seq C2 exon
GTGTCTTCTCAGGAGGAGCTACAGAGGGAGAAACATGACCAAGAGGTTGCTGCCAGCCCAGCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030517-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATTGAGCTTATTGGGCTT
R:
CCAAAGCTGGGCTGGCAG
Band lengths:
168-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]