RnoALTD0034659-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000051836 | Zfp92
Description
zinc finger protein 92 [Source:MGI Symbol;Acc:MGI:108094]
Coordinates
chrX:157389916-157391091:-
Coord C1 exon
chrX:157390990-157391091
Coord A exon
NA
Coord C2 exon
chrX:157389916-157390666
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
GGGTGGCTCTGTCGTTACAGGAA
3' ss Score
7.65
Exon sequences
Seq C1 exon
GATTTGCTTTCTCCAAGCCTAACCTGGTATCCCAGCTGGAGAAAGGGGAGAAGCCCTGGATTAGGGATGGTGGAATGGAGAGTGCGGCAGGATCCTGTACCG
Seq A exon
NA
Seq C2 exon
GAAATAGGATAAAGAGCAAGACTCTGACTCCAAAACCGAAACTTTTTGGAAGAGGTCTCCTCAGAGACACCTCGGGATCCTCACTGCAGAGACGTCCTCATGATTTCAGGCCAAATCCCATTGTAAGGTACCAACACTCCAGAATCGCGGATAAGCGGTATCTATGTCAGCAGTGCGGAAAATCCTTCAGCCGCAGCTCCAATCTCATCAAACACCGGATCATCCATAGCGGTGAGAAACCGTATGAATGCAGCGAGTGTGGGAAGCTGTTCAGGCGCAGCTTGGCGCTGCTGGAACATCAGCGCATCCACAGCGGCGACAAGCCTTATGAATGTGGTGAGTGTGGCAAAACCTTCACGCGCAGCTCCAACCTTGTCAAGCACCAGATCATCCACAGCAGTGAGATGCCGTTCATGTGCCGCGTGTGCGGCAAGGTGTTCCGGCGCAGCTTCGCGCTGCTTGAGCATGCGCGCATCCACAGCGGCGAGCGGCCCTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051836-2-4,3-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=10.4),PF054957=zf-CHY=WD(100=31.1),PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=9.6),PF134651=zf-H2C2_2=PU(48.4=6.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGAGAGTGCGGCAGGATC
R:
GATCCCGAGGTGTCTCTGAGG
Band lengths:
108-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]