RnoALTD0034716-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000004104 | Zkscan7
Description
zinc finger with KRAB and SCAN domains 7 [Source:RGD Symbol;Acc:1305242]
Coordinates
chr8:131933317-131935470:+
Coord C1 exon
chr8:131933317-131933417
Coord A exon
chr8:131933418-131933430
Coord C2 exon
chr8:131934947-131935470
Length
13 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TTCTCTTTGTATTTCTGTAGGTG
3' ss Score
10.84
Exon sequences
Seq C1 exon
CTTACCTTGGCAACCAAGACTTCCGGAATTCAAGAGATACCGGAAGTGACGTTTCCTTGCTTCCCGTCCCGCCATTGTTGCCATTTCTTAGTGTCCTGGAG
Seq A exon
GTGTGTGGCGCTG
Seq C2 exon
GTGACACTCTCCTCACCTCCTTTCTTGACTCTGAAAAACAGTTCCTGCAGCTTGAAGCAGAGACTCATTTCCAGTGTGCCTGCTGTAGCTGGGACCAGCTTCTCTCTGGGATCACAATGACCATGGAAGGCAGGGGGACACTAGATATCATCCCCAGGACTGCGGTGTATCAGAAGCAGGAGGGGAGCTTGACTGTAAAGCAGGAACCAGGAAGCCAGACCTGGGGACAGAAGAACTGCCCTCCTGTCTGTGAAATATTCCGACTGCACTTCAGGCAGCTGTGTTACCATGAGATGTCTGGCCCTCAGCAGGCCCTGAGCCGGCTCAGGGAGCTCTGCCACTGGTGGCTGATGCCAGAGGTCCACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGAGCATCCTGCCCAGGGAGCTTCAGACCTGGGTGCAGCTGCATCACCCCGAGACTGGCGAGGAGGCTGTGGCCGTGGTGGAGGATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004104-0-0,1-0,2-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.110
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(96.9=68.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCATTGTTGCCATTTCTT
R:
GAGTCTCTGCTTCAAGCTGCA
Band lengths:
99-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]