RnoEX0000049 @ rn6
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr4:162423630-162440362:-
Coord C1 exon
chr4:162439438-162440362
Coord A exon
chr4:162428326-162428399
Coord C2 exon
chr4:162423630-162423726
Length
74 bp
Sequences
Splice sites
3' ss Seq
TAAACTTTGCTTTATTTTAGATA
3' ss Score
9
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
AAGGTAAACCTCTCAACACAAGAAACTACTCCAACCACATGCCTGTGTGCCCTTTCTCATGCCACTTTAACAAGACAAATGTCCCATAGGCTCCTAACCCAAAATGTCTGTATACTAAGCCAGCCAGCAAGCTTATGCAAACTCGAGGTCAGAGAGCTACAGGATGTGGTCCCTTTGCAGTTACATTTGAGCAGAGACCACCAACTGCCACTACTCGCTTCCTCCTCTCACTTCTCTACAAGTTTCCTTCCAGCTTTTCATAACCTCTCTGTATAACATTTGCTGGTGAGATTCTTGAGAAATTCTGAATTGAGAGCAGAGTTCTGGGTCAGCAGGGCTGTGCATACGGTCTCTCAGCATCTCCCCGAAGTGCTTGTTCCTGACAGGCTACTGCTCGGCACTGCACTGTGAGTGATGAGCTGAGGAGGTTGCTCTGACAAGATGGAGGAACTGAGGCAGGATTCTCTGCTCCATGGATCCACTGTACGGCGTCTGCAAAG
Seq A exon
ATAGTGTTCCAGCTCCTTGAAATTGGATGTCTACTTCTTGAAATGGACACCTTTCAGGCCAAGATTTTGGAGAG
Seq C2 exon
GCCCATGGAGATGGAGAACACACTGGCAGCGAACATGGGAGAGAGCAAAACTCCGCCTGGTGACATGTGGAAGCCAGAGACCACAAAGGAGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
Rn.118256_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGAGCTGAGGAGGTTGC
R:
CTCTGGCTTCCACATGTCACC
Band lengths:
168-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]