RnoEX0000424 @ rn6
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr9:10024391-10033183:-
Coord C1 exon
chr9:10032417-10033183
Coord A exon
chr9:10029504-10029617
Coord C2 exon
chr9:10024391-10024513
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCATGCCCTTTCCTTCCCAGGGT
3' ss Score
10.25
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
ACTGTACCTAGTCTGTGTCTTCTCCAGCTTCTGAGCGAAATAAAGCTGCTTTCTCCCAGTGTTCTCTTTTACATCACGGATAACTTATAATCACGTGAGAATACGTCACTTCGTGACGTCAAGACGCGGGCAACGTGGAGCATCTTGGGTAGGGTGGGAATGGAGTCTTCTGGTGTTCGCGTCCTCGGTACTCTCGCGCAAGCGTAAATGTCCAAGAAGCGGGAGCGGAGGCCGCGTTGCCATGGCAACCGAGGCTCGCTCTGTGGAATGGCCTCCGGGGCTCTTCTGGGGTGGGTCTGAGATTCCGTTTTCTTTTGTGTCCTGGAGTCAGGGGATCCCGAGGATCTTGCAAAATGAGTCCCTTGTGACGTAAAGCGGAGCCGAGGAGTCGTTGCAGGGCAGAGACCCGGCCCCGGCGTACCCCAGCATTGCGGGCGGGATGGGTCTGTGCGAGTCCACGCTGCCCCAGCTGGGCAGAGCTTTACGGCCCCAGGAGAAGG
Seq A exon
GGTCTCATTCTGGACATGGTCAGTGACAACTTGTTGTCTTATCCAAAGAGCCGCGGCTTTCTCGTCGATGGCTTCCCCAGAGAGCTGGAACAGGCCAAAGAGTTTGAGCGGATT
Seq C2 exon
ATATTAGCTGAAGGAGCCCCTGAAAGCATCTTCGCCAAGTGCTGTTCAGTCATTGAGAGTCTGCAGTGAGCTAGGTAGGACTGGGCCAACATCTCGCCTACCCTTCTCCACAGCAGACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
Rn.162359_MULTIEX1-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGGGGTGGGTCTGAGAT
R:
GATGCTTTCAGGGGCTCCTTC
Band lengths:
248-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]