RnoEX0000760 @ rn6
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr1:201844815-201846677:+
Coord C1 exon
chr1:201844815-201844856
Coord A exon
chr1:201845573-201845611
Coord C2 exon
chr1:201846639-201846677
Length
39 bp
Sequences
Splice sites
3' ss Seq
TCCTTTGTGTTTCATATCAGGCA
3' ss Score
8.9
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
TTCCTACCTCAAACCCAGCCACAGTTTGGGTCCCTGCAACTG
Seq A exon
GCAGCACCACCGCTGTGGTAGAAGTAACTCCTTTATCTG
Seq C2 exon
ATGTGCCTTTAACCTCCACCGAAGAGGAGAGCTCCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
Rn.226277_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTACCTCAAACCCAGCCA
R:
GAGCTCTCCTCTTCGGTGGA
Band lengths:
76-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]