RnoEX0000972 @ rn6
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr3:44896653-44920645:+
Coord C1 exon
chr3:44896653-44896936
Coord A exon
chr3:44907268-44907402
Coord C2 exon
chr3:44915479-44920645
Length
135 bp
Sequences
Splice sites
3' ss Seq
AGAGCTTGTTTTTCCCTCAGATG
3' ss Score
7.77
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
TCATTAGTAACTCAGAGCGCACGCTTGAACGGTTCCTCCAGCTCTCTGCGTGGACTCTACACCAGGACCGCCAGTTCCCGTAAGTACCTGCTGCTCATTGTATGTGGTCAGGGTGAAGAGCGGCTTTTGAAGAGTGAATTCCTCCTCACTCACAGCGCCTATCCGAGCTTTCCAGGCCAGTGTCTCTGACATCATTCTAACTGGATCAGACCGGACAGCGACAGCAACCTGAGGGAAGAGAAAGCAGGGACGCTCAAGTGGGGATACAAGTCAAAGGCTTCTGG
Seq A exon
ATGAACAGAACGTATCTCGATGACAGCTGAGTCTGTTCAGTGGATCGAGGCAGAGCAGAATAACCAGAAGCATAGTCGCCCAGAAGAGGTGGCATGCTCTCCCTTTCTCAGAATAGTCCTGCGAGCTACAGAAAG
Seq C2 exon
GGCTCTCAGAACTTTTGCAGACCGCAAACATCAAAAGGACCAGAGATATTTTTATAGTGATTCGGCTGCCCACGGCAATGCAGTCAACCTTGATTTTCTTTCAGCCTGGGAAGCGATCAGCAAAGAGGCTCAGCAAACAGCTTTAACATCTGAGGCCAAAAAAGAAGCATAAAAATTTGCTTTCATAAACACCTCCTGGGAAGGTTGATGCCTTATTTCCTCTTGTTTTTTTCTTTTTTAAAGAAGGCTACCTTTCTTATTTCCATGGTAAGAATATTACACAATGTTTACTATCAGAATTTGGGGGAAGCGGGATGCTGGGAAGATGAATGATTTGGTAAAGTGGTTGCCTTGCAATTCATGCAAAAAAGAAAAGAAAAAAAAAGCGTGTGGTGGCCTGCACCTATAATCTTAGTGCTGATGTGTGTGTGAGAAGGACGGGAGGATCCTTGGTGGGTCTAGTGGATTCAGTGAGAGACATTGTCTCAAAAATAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
Rn.43872_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGAAAGCAGGGACGCTC
R:
TCAACCTTCCCAGGAGGTGTT
Band lengths:
258-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]