RnoEX0001224 @ rn6
Exon Skipping
Gene
ENSRNOG00000058030 | AABR07001905.2
Description
NA
Coordinates
chr1:61724073-61726590:+
Coord C1 exon
chr1:61724073-61724675
Coord A exon
chr1:61725922-61726023
Coord C2 exon
chr1:61726521-61726590
Length
102 bp
Sequences
Splice sites
3' ss Seq
TATTATTTTCTCATCCTCAGGTG
3' ss Score
11.17
5' ss Seq
AAAGTGAAG
5' ss Score
-2.53
Exon sequences
Seq C1 exon
CTTTCAGATATTTGTTCCTTTTCTTTGTGCTTTCACTCCATTGAACAGTTTGTAAAACTGTTTTGTAGTCTGCCTCTAATTTGCTGTCCTTAGAGAGCACTGTCCCTTTTCACCCTTTCCCATGGCAGCTGACAGCTTCAGCGTCGCTGCTGCCATAGGAGCGTTGGACACTTGCAGTTTTCAGGGCTGGCCACAGCTGGGACCCTTGGGAAACCAAACGGAAGAGGAAGTAGGTGGGCGGGATTGGGTACATGTGAGAGGAAACTATATAGTTGGCGGGGCCAGAGTGGGCAACGTATCCCCAGAATCAGGGGAGGGGCGCAGCAAATTTGCTAAGGAATTTCGGGGGGTACATAGTGCAAACCTGGACCGAGGACACTGTCCGGGGTCTTGCAGAGACGTGAAAACTACCTTAAGCCTCAGGTTTCGCGCGGGGAATCCTGGGAGAGTCAGCAGCGCTGCGGCAGGAACCGCTGCCGGGCGGCCCGGGAACCTCCCAG
Seq A exon
GTGTCTTCTCAAACTGGGCCACATGTGTGAGCTTTATGTGGATGAACCTCACAACACATCTCATTACAGTGAAAGATTCTCAAAGCAAGAAAGAATATTAAA
Seq C2 exon
GACTTACTGATGAAGTGGAACAAGGAGCCCTGGATGGTGAAGAGAGAGAAGACAGTAGCAAAGGATACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058030_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAACGTATCCCCAGAATC
R:
CAGGGCTCCTTGTTCCACTTC
Band lengths:
244-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]