RnoEX0001229 @ rn6
Exon Skipping
Gene
ENSRNOG00000059824 | AABR07001929.1
Description
NA
Coordinates
chr1:62333297-62360073:-
Coord C1 exon
chr1:62359993-62360073
Coord A exon
chr1:62357914-62357977
Coord C2 exon
chr1:62333297-62333415
Length
64 bp
Sequences
Splice sites
3' ss Seq
TTTACCTTCTTTTCTTCTAGAAA
3' ss Score
11.5
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTCTCCCACTGCCCAGACAGATCTACTCACCTGTGAATCAACTAAGAACCCCGGATGGTGAAGAAAGAGTAAAGACTCCAG
Seq A exon
AAAAGGTACAGCCTTATATCTAGGCCTCAGGATCTCAACTAATCATGTTAAAATAATCAGGCAG
Seq C2 exon
TTTTAAGAAGAATTCCTGTGTTTGTTCCTGATACAGAAACTTGGAGAAGAGCAATAAGAAGAATGAATTCTGCTTTGGTAAATGATCCCCAGGTCAGTGTCCTGTCCTCCTTTCTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059824_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCGGATGGTGAAGAAAGA
R:
GGACACTGACCTGGGGATCAT
Band lengths:
136-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]