RnoEX0001260 @ rn6
Exon Skipping
Gene
ENSRNOG00000051384 | AABR07002337.1
Description
NA
Coordinates
chr1:71206130-71223665:-
Coord C1 exon
chr1:71223047-71223665
Coord A exon
chr1:71208071-71208254
Coord C2 exon
chr1:71206130-71207972
Length
184 bp
Sequences
Splice sites
3' ss Seq
CTCTCCATGCTCCCCAACAGATT
3' ss Score
8.19
5' ss Seq
CTGGTGACC
5' ss Score
2.02
Exon sequences
Seq C1 exon
CATAACTTTCTCCCAGGAAGAGTGGGAGTGCCTGGAGCCTGTTCAGAGGGATTTGTACAGAGATGTGATGTTGGAGAACTCCAGCCACCTGGTCTCACTGGGTAAAGTGGTGTGGTTAGTTATCGGGTATCCTTGGCATAGCCCTTCCCGGTCAGTTAACCATTGGGTGTCTTTCAATTCCGTGTCTGGTTACTTTTGAGCTAACAAAAGGCAGCCAGTTGTTTGAAGCCATGTTTTCTGCTACTCTTAGGTCACTATTACATTTTTTGTTTTGTTTTGTTGTTTGTTTTTTCTTTGTTTTGGCCCTTCCTGCAATTATCTCCCTACTCAGTGACAGGTCCCTGGATCTGAATTCCAAGGCCTCTCAGTGTAACCACCTGGTGGTTTTCTCTCCTCTTCTCCAGGTCTTGCCATGTCCAAACCTGATGTGATATCCATCCTAGAGCAAGGTAATGAGCCCTGGGTACAGGAAAGGGCCACAGCAGTAGTGCTGGGTTCAG
Seq A exon
ATTGCTTGGCTAGAGTGTGGGAAAGAAGATCTTCCCCCATGGAGTCACACAACAGAGCCACTGCCTTTCCAGCTGTCACCATGGGATACTTGTGTGTGACCCACATACACCATGCCGGGAACCCTGACAAGAATGCTGAGCAGTGACTAGGAAGGGGGCAAGCAGAGGCGTACATTTCTTGCTG
Seq C2 exon
CATTGGAGTCTGGATGTGGTACCAAGATAACGCCCTCCAAGCAACGCACTCATGAGGAGGACTCCCCACAGTGGGCGACAACAGAAAGCCTTCCAAGCTGCAGTCTTGAGAGCGCAAGTCTCTGAAATGACTGGGAAGGCAAAGGCCTATTTGATAGACAAGCAGGCAATCCAGCCAGAAACGCCGGGCCAGTGTTAATCTGTCACCAAGAAATGCCCGCATTAAACCAGCACATGTCTCTTACTTTTTACCAGACAAAGTCCCGTAGGTATAAAAAACACAGAAGAGACTTCTGTAAAGAGCAGTTCCTTATTAACCAAGAACTTGGTTACGAATGAGAAACCCTACAAGTGTAGGCAGTGTGGGAAGGCTTTTAAATACGGCTTGTGACTAATCCAGCATGAGAACATTCATTCGGGCAAGAAGCCTTATGAGTGTTAAGAGTGTGGGAAGGCCTTCAATTCTGGTTCTAATTTCATAGAACACCAGAGAGTTGATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051384_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGGGCCACAGCAGTAGTG
R:
CGGGCATTTCTTGGTGACAGA
Band lengths:
250-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]