RnoEX0001350 @ rn6
Exon Skipping
Gene
ENSRNOG00000061844 | AABR07005618.1
Description
NA
Coordinates
chr1:190368992-190370499:-
Coord C1 exon
chr1:190370269-190370499
Coord A exon
chr1:190369977-190370038
Coord C2 exon
chr1:190368992-190369166
Length
62 bp
Sequences
Splice sites
3' ss Seq
TGCCTTTGTGGACCAGGTAGTGT
3' ss Score
-3.57
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATGGCGGCCACAGCCCAGCAGTCCCCTCCGTCGGTCGGCGGAAAGCGCAAAGGCAAATCCCAGTTCCTGCCGGCCAAGCGGGCCCGACGCTGTGACGCAGGCGGACCGCGGCAGCTGGAGCCCGGCTTGCAGGGCATCCTCATCACCTGCAACATGAACGAGCGCAAGTGCGTGGAGGAGGCCTACAGCCTGCTCAACGAGTATGGCGACGACATGTACGGACCCGAAAAG
Seq A exon
TGTGCTAAAGACTGCAGATCTTGCGTCGGTGCGAAGTTGCTACAAGCTAAGATCTCTCCGAG
Seq C2 exon
TTTATAGACAAGGACCAGCAGCCCTCTGGAAGTGAGGGAGAAGATGATGATGCAGAGGCTGCCTTGAAAAAAGAAGTTGGTGACATTAAGGCTTCTACAGAGAAGAGGCTGAGAAGATTCCAGTCAGTGGAGAGCGGAGCAAATAATGTAGTTTTCATCAGGACACTTGGGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061844-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.409 A=0.000 C2=0.426
Domain overlap (PFAM):
C1:
PF087955=DUF1796=PU(28.0=33.8)
A:
NO
C2:
PF087955=DUF1796=FE(62.4=100)
Main Inclusion Isoform:
ENSRNOT00000084389fB14
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCCTCATCACCTGCAACA
R:
CTCACTTCCAGAGGGCTGCT
Band lengths:
134-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]