RnoEX0001374 @ rn6
Exon Skipping
Gene
ENSRNOG00000020560 | AABR07005821.1
Description
NA
Coordinates
chr1:201650226-201662926:+
Coord C1 exon
chr1:201650226-201650326
Coord A exon
chr1:201660889-201660918
Coord C2 exon
chr1:201662894-201662926
Length
30 bp
Sequences
Splice sites
3' ss Seq
CTGAGCTTTGTCTTTTTAAGGTT
3' ss Score
10.95
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
TCACCACAGTAAGGATTTCTGCCAGGTTTCTTGTGGGTGAAACACAGTCTGATTTGCTTTTATTCCTTTCACAGATTCTCAAACAAGCAGTCCCACACCCG
Seq A exon
GTTGGTGGAACCCCGGGTTCACAAATAGTG
Seq C2 exon
ATGTGTCCTATGGACCCGAACAGACCACAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020560-'12-14,'12-13,14-14
Average complexity
C2
Mappability confidence:
56%=20=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.939 C2=0.833
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCCAGGTTTCTTGTGGG
R:
TGTGGTCTGTTCGGGTCCATA
Band lengths:
114-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]