RnoEX0001553 @ rn6
Exon Skipping
Gene
ENSRNOG00000023908 | AABR07009919.1
Description
EGF-like and EMI domain containing 1 [Source:NCBI gene;Acc:310269]
Coordinates
chr2:117103542-117109638:+
Coord C1 exon
chr2:117103542-117103679
Coord A exon
chr2:117109197-117109339
Coord C2 exon
chr2:117109516-117109638
Length
143 bp
Sequences
Splice sites
3' ss Seq
CCTGTCTTTTTGTTCTTCAGGTT
3' ss Score
12.36
5' ss Seq
AGAGTAGGT
5' ss Score
4.84
Exon sequences
Seq C1 exon
GAATTGAATTAGAAATTGTCAATATCTGTGAAAAGAACAATGGCGGTTGTTCTCATCACTGCAAGGCTGCGATTGGTGGACCCCATTGTTCCTGTAACCACGGACATCAGCTCGATACAGATGGGAAAACATGCATAG
Seq A exon
GTTCTGTTTATTCAGATTGCTTTTCAAACTGGAAAAATAGCAGAGATCTCTCTTTTTCCTTATAAATGCATTTGAAGATTATTTACATTCCTTTAAAATAAATAACAGACATGCGAAGAGCTTGCAAGAAGCGTGAACCCAGA
Seq C2 exon
ACTTTGATGAATGCAAGAGCGGAGAAGCCTGCTGTGCCCAGCTCTGTATCAACTACTTAGGAGGCTATGAGTGCAGCTGTGAGGAAGGCTTTCACATCGATGCGGATGGTTGTGGATGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023908_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=76.6),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NO
C2:
PF0764510=EGF_CA=WD(100=95.2)
Main Inclusion Isoform:
ENSRNOT00000039603fB35
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATATCTGTGAAAAGAACAATGGCG
R:
CGTCACATCCACAACCATCCG
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]