RnoEX0001777 @ rn6
Exon Skipping
Gene
ENSRNOG00000021575 | AABR07021096.1
Description
complement factor H-related 2 [Source:NCBI gene;Acc:688887]
Coordinates
chr13:56660676-56676791:-
Coord C1 exon
chr13:56676609-56676791
Coord A exon
chr13:56675275-56675451
Coord C2 exon
chr13:56660676-56660858
Length
177 bp
Sequences
Splice sites
3' ss Seq
TCAATTTTATTATGCATTAGAGT
3' ss Score
3.64
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AGACATGTTTAAAGTCAGATATTGAAATTGAGAATGGATTTCTTTCTCAATCTGATTCTAAATATCTTCAAAATAAGAAAGCACAGTATATGTGTAAACAGGGATATGTGACAGCAGATGGAGAAACATCTGGATCAATTACCTGCCTAGAAAATGGATGGTCAGCTCAACCCTCATGCCTTA
Seq A exon
AGTCGTGTGATGTGCCTGTGTTTGAGAATTCTGTAACTAAGAATAATAGCACATGGTTTAAACTCAATGACAAATTAGACTATGAATGTCACATTGGATATAAAAACAAGTATAAACATACCAAAAGCTCCATAACTTGTACTTATGAAGGATGGTCTGATGAACCCACATGTTATG
Seq C2 exon
ATTCAACAAAGATATGTGGGCCTCCTCCACCTATTGAGAATGGAGACATCACATCCTTCCCACTACCAGTATACATACCACCATCATCAGTTGATTATCAGTGCCAGTATTTGTATCAAATGCAGGGCAACAAAACAATCATATGTATAAATGGAGACTGGTCAGAGCCACCAAAATGTTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021575-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(3.1=3.2),PF0008415=Sushi=WD(100=93.5)
A:
PF0008415=Sushi=WD(100=93.3)
C2:
PF0008415=Sushi=WD(100=88.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGATATGTGACAGCAGATGGA
R:
TGGCTCTGACCAGTCTCCATT
Band lengths:
254-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]