RnoEX0001843 @ rn6
Exon Skipping
Gene
ENSRNOG00000048741 | AABR07021946.1
Description
NA
Coordinates
chr13:99993419-99999577:+
Coord C1 exon
chr13:99993419-99993519
Coord A exon
chr13:99995303-99995555
Coord C2 exon
chr13:99999477-99999577
Length
253 bp
Sequences
Splice sites
3' ss Seq
CTTGTGCTTTTTCTTACTAGGAC
3' ss Score
10.67
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
AGAGGATTAGCCTGACTAACAAGATCAGACTGGTGTTTGAGGTGGACACTCTCTTTAACGCCACCCCCTCTATTGTCACCCGGTGCGCGGTGGTGTACATG
Seq A exon
GACCCTGTTGATCTGGGATGGGAGCCTTACATTAAGTCATGGCTTCTGAGAACTTCGAAAAGCCTAAATCAGCAGGGAATGCAGTGTCTCGAAATTATGATTAATAAAAGTGTTGATGAAGGGATGAAATTCCTGAAAAAGCATAAAAAGTTCCTACCCTGCCCCATACAAGAAGTGACGGTCGTTATGACTCTATGCAGGATTCTAGATGCTTTTTTTGAATTCATGCATATAAAAAGAGAAACTCCAAAAA
Seq C2 exon
GTCATGAAGCAACGGACAACGGGTCCCCTACCGAGACAAAGGCTTTAAGAGTCAAGTTCAAGGAGGAAAAGAGGTCAGTGTCACCCTAACAGTGAATGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048741-'16-18,'16-17,17-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGCCTGACTAACAAGATCAGACTG
R:
ACACATTCACTGTTAGGGTGACAC
Band lengths:
196-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]