RnoEX0002310 @ rn6
Exon Skipping
Gene
ENSRNOG00000011300 | AABR07031193.1
Description
NA
Coordinates
chr18:3815544-3821009:+
Coord C1 exon
chr18:3815544-3815697
Coord A exon
chr18:3818083-3818320
Coord C2 exon
chr18:3820849-3821009
Length
238 bp
Sequences
Splice sites
3' ss Seq
TGCTCTTCTCTTTCTTCCAGGTA
3' ss Score
13.16
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
TTGTTTGCTTTACCAGCATTTACCACTGACCCGATTCTCCTGTACCCTGGCTTGTGAGGCCACACACTTCCTGATTGATGGAGAGCGGAGACCCTTGGCAGTGAGGCAGCCCATGCCCACACACCCAGCCATGGTGGACCTCAGTGGGACAGAG
Seq A exon
GTATGTTTCTGTTCCTTGTCCTCCATGCTCAGCTAAGCCAATGCTTCCTCAAGGAAGCTTCCTACCATCTTCCTGACGAGCTCAGTCCTTCTGTTCCCATGGCACTTCCTGAGAGAGTTTGCCACATGTGAAACATACACTGTAGCTACCTAATAATCCAGTTATCCGAGAGTAGAACTCAAGTCTGCATATGTCCTATTGGATGCTCACTAGCTGGATGGTGGACTGGCCATGGCAG
Seq C2 exon
GTGGAATTGCACCTACGTCTGCGGGTCCCACAGATTGGCCACTATGTGGTCATGTTGGAGTATGCCACGGAGGTGGACCAGCTTTTTGTGGTGGACGTGAATCTGAAGAGCCCAGAGTCTGCCTTGGCAGGCCAGGTGAACATATACAGCTGCAAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011300_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000092846fB93
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCATTTACCACTGACCCG
R:
GCTGTATATGTTCACCTGGCCT
Band lengths:
292-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]