RnoEX0002419 @ rn6
Exon Skipping
Gene
ENSRNOG00000001825 | AABR07034767.1
Description
NA
Coordinates
chr11:88929823-88941126:-
Coord C1 exon
chr11:88940949-88941126
Coord A exon
chr11:88940091-88940124
Coord C2 exon
chr11:88929823-88929940
Length
34 bp
Sequences
Splice sites
3' ss Seq
TTTGGTTCTTTTTTTCGGAGCTG
3' ss Score
-2.31
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
GTTTGCTCTGGAACTTGTCCTCTAGTGATAAACTCAAGCATCTCATGATAACAGAAGCCTTGCTCACCTTGACAGAGAGTGTCATCATCCCCTTCTCAGGGTGGCCTGAAGGAGACTACCCCAAAGCCAATGGCTTGCTTGATTTTGATATATTCTACAATGTCACTGGATGCCTAAG
Seq A exon
CTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAG
Seq C2 exon
AAACATGAGCTCCGCTGGCCCTGATGGGAGGAAGGTGATGAGGAGGTGTGATGGTCTCATTGATTCATTGGTCCATTACGTCAGAGGAACCATTGCAGACTACCAGCCAGATGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001825-'25-24,'25-23,26-24
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.091 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000002498fB99
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGAAGGAGACTACCCCAA
R:
CCTCCTCATCACCTTCCTCCC
Band lengths:
121-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]