RnoEX0002712 @ rn6
Exon Skipping
Gene
ENSRNOG00000059770 | AABR07044383.1
Description
NA
Coordinates
chr20:5347661-5377939:-
Coord C1 exon
chr20:5375732-5377939
Coord A exon
chr20:5375281-5375550
Coord C2 exon
chr20:5347661-5347930
Length
270 bp
Sequences
Splice sites
3' ss Seq
TCCGACCCGGGGTCACTCACCGC
3' ss Score
-6.83
5' ss Seq
AGCCTGGGG
5' ss Score
-12.76
Exon sequences
Seq C1 exon
TAAGTGGGGAAGTTCTCTCCTTCCCTCCTGAGAGGGACTCAGAACTCTCCAGGGAGAAGGCTGGGCCCTGGGAGAGCAGTGCAGTCACTGTGATGAGGGATGAGGAGACCCAGGGACACTGTCTCCCCTCTGAGACAGGGGCATCACCCAGCTGAGGGTTCCTTCTTCCCCAGGACTGAGACCCAGCCCGAGGGCAGAGGAGGAGAAGCCCGTGGCCCCCGCACCTGAGCGCAGCAGCGTCTCCTTCCCGAGTTCCAGGTATCTGCGGAGCCACTCCACGCACGTGCCCTCCAGGTAGGCCCTGAGTCTCTCTGCAACACCAGCCTGATCCCACTTGCTCCGGGTGATCTGTGCCGCAAAGTCCGCCGCCGTCCACGTTTTCAGGTCTTCGTTCAGGGCGATGTAATCGCGGCCGTCGTAAGCGTCCTGATAATACCCGCGGAGGAGGCTCCCGTCCGACCCCATGTCACAGCCATACATCCTCTGGATGGTGTGAGAGC
Seq A exon
CGCCCTCGCTCTGGTTGTAGTAGCGGAGCGCGGTCCTCAGGTCCACTCGGTAAACCTGCTCGTTTCTCTTGGCGTTCTGGGTCTCCCTCTCCCAATACTCCGGCCCCTCCCGCTCCATCCACGGCGCCCGCGGCTCGTATCTCGGATTCTCTGCATCGCTGTCGTAGCGCACGAACTGCGTGTCGTCCACGTAGCCCACTTCCATGTACCGGGGCTCCCCGAGGCCGGGCCGGGACACGGCGGTGACGAAATACCGCAGCGAGTGAGAGC
Seq C2 exon
TGTCCTCGCTCTGGTTGTAGTAGCCGCGCAGGGTCCTCAGGTCCACTCGGAACCACTGCTCCGTTTCCTGGATTCTCCGTGTCTCCTCCTCCCAATACTCCGGCCCCTCCCGCTCCATCCAGGGCGCCCGCGGCTCCATCCTCGGATTCTCCGCGTCGCTGTCGTAGCGCACGAACGGCGTGTCATCCACGTAGCCGACAGCGATGAAACGGGGCTCCCCAAGGCCCGGCCGGGACATGGCAGTGTAGAAATACCGCAGCGAGTGTGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059770_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGGCCCTGAGTCTCTCTG
R:
AGGAGACACGGAGAATCCAGG
Band lengths:
294-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]