RnoEX0002721 @ rn6
Exon Skipping
Gene
ENSRNOG00000048929 | AABR07044389.1
Description
NA
Coordinates
chr20:4510429-4516810:-
Coord C1 exon
chr20:4516674-4516810
Coord A exon
chr20:4515768-4515870
Coord C2 exon
chr20:4510429-4510528
Length
103 bp
Sequences
Splice sites
3' ss Seq
TATGTTGTTTCTGACCCCAGGGC
3' ss Score
8.7
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
Exon sequences
Seq C1 exon
GTTCGGCACGCGAGGCCATCGAAGAGCTCGTGCAGCTGTTCCCACGGGGGCTGTTCGAGGACGCGCTGCCGCCCATCGCGCTGAGGACTCAAGTGTACAGTCTGGTGCCGGACAGGACGGTGGCCGACCTGCAGCTG
Seq A exon
GGCAAAGACTGCAGACTCAACCCAATTATAATTAAAATGTTTATTGATTACTGAGAGCAGGACAACAGTCTCTGAGCCATACAGAACAGAGTTGGAAGCTGAA
Seq C2 exon
ACAGAAGGAGCTTCAAGATCGGGGAGAGATCCAAGTCATCCAGCTAGGCTTTGACTTGGATGCCCACGGAATTGTCTTCACTGAAGACTACAGGACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048929-'2-2,'2-1,3-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCATCGAAGAGCTC
R:
CCTGGTCCTGTAGTCTTCAGTGA
Band lengths:
226-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]