RnoEX0003255 @ rn6
Exon Skipping
Gene
ENSRNOG00000059181 | AABR07055919.2
Description
NA
Coordinates
chr7:15856550-15865695:-
Coord C1 exon
chr7:15865302-15865695
Coord A exon
chr7:15865036-15865113
Coord C2 exon
chr7:15856550-15856676
Length
78 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCTCTCGGTCCCCAGGTT
3' ss Score
11.24
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
CACGACGAAGCGAGTGCCTGCACTAAATCCCAGAGGGCGTTGTGCTTAAATGCAAGGATCCCACGGGTTTACGCCAAAGGGAAGGCCTGGGTTACGATTGGGTGTTGATCTTATCTATCATTTTTATTTGCCTGGGATGGGAAAGGTCGTTGATCCTGCTACTCACGAATAAGAAGGCGGGTCCAGCATCTTTCGCCAATCAGAGCCGCTGTTACTTCCTTGCTGGAACTGTCAAATGAGGAACACGGATGTTCTGAAGTTTCTGCCCCTGGCTCCATTTTTGAATCCCGTGTAGCTTTTGTGAGGTGTAGTGACAGCTGGTTTCAGTCAGTGCTGCCTATTTTGTCAGCAGGCCCTTCCGAAGGACCTCTGCATGCGTCCGAAGCTGGAAATG
Seq A exon
GTTATCATGGGGAATCCGCGCGATGGACATGCACCCGGCAGACTTTGCAGCGCGGACGGGTTGGTGATGCGGAGTCTG
Seq C2 exon
GAGCCAGTGACCTTTGAGGACGTGGCTGTGAACTTCACCTCAGGAGAGTGGACTATGTTGGATTCCAGTCAAAAGAAGCTCTACAGAGATGTGATGAAGGAGACCTTTCTGAACCTGATCTCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059181_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGAAGTTTCTGCCCCTGG
R:
GTTCACAGCCACGTCCTCAAA
Band lengths:
176-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]