RnoEX0003495 @ rn6
Exon Skipping
Gene
ENSRNOG00000043176 | AABR07059308.1
Description
NA
Coordinates
chr4:14109878-14113255:+
Coord C1 exon
chr4:14109878-14109978
Coord A exon
chr4:14110788-14110873
Coord C2 exon
chr4:14112305-14113255
Length
86 bp
Sequences
Splice sites
3' ss Seq
CCATAACCTTTGTCTTGCAGGAA
3' ss Score
9.05
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GATGGTCTTACTTGGTGTTGGAGTAGTGATGTTTGTTGCTTTTATGATTTCATACTGTGCTTGCAGATCTAAGAATGGAAAATAAGTAAGTGCACATCAAA
Seq A exon
GAATTTTGATTTTAATCCCAATAACTAATATTGAACACATACTGATAATGCTAAATATTTTACATGAATTATCACATCACCCCTAT
Seq C2 exon
GTAGTGGATGAGCCTACATTATGCACTAGTTACATCTTTGGTAAAACCAATCTCCAAAACGAAGACTTAATACATGCTTGTTTTTATAAAACACACCTATCTGTAGTTGAAGAAATGGTGGTGTGCGCTCTCTCTCTCTCTCTCTTATTGCAGATATATATTTATTTATATATTGCAATAAGCTACAGCATATTTCAAAAAGATTAATATGTCACTAAGCCTATATTTTTTAATAAAATCTTGTATTTTGTTAAGTCCATCATCTGCAACTGAGTGGACTTCAATTTCCGCAGAACCAATTATCTTTTTTGGTTCTAATTTACTGATATTTTTTTCCTGTTGGCAAGTTTCAAGAATGTATATTCCTAGAAACATTTTGTTCCTCATCGAAGTAAACTGTTATCATGTCTGGGGTGGCCCTTTCATTTATAGCAAATGTTCCTTGTGACTGTCAGCACATGATATGTCATAAGTATTATATCATTTTAAAGATTTAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043176-'13-12,'13-11,14-12
Average complexity
C1
Mappability confidence:
50%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCTTGCAGATCTAAGAATGGA
R:
AGCGCACACCACCATTTCTTC
Band lengths:
175-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]