RnoEX0003588 @ rn6
Exon Skipping
Gene
ENSRNOG00000053339 | AABR07062512.1
Description
NA
Coordinates
chr4:180481859-180485395:-
Coord C1 exon
chr4:180485200-180485395
Coord A exon
chr4:180484462-180484464
Coord C2 exon
chr4:180481859-180481951
Length
3 bp
Sequences
Splice sites
3' ss Seq
TTTGATCTGGTGATCATCAGGTA
3' ss Score
5.5
5' ss Seq
GTAGTGTGA
5' ss Score
-7.23
Exon sequences
Seq C1 exon
CTTTTTGACTTGGTGTACAGAGAAGAGACCCTGCTGAACGTCATCAAAAGCGTCACACGGAATGGCCGCTCCATCATCCTGACTGCGGTCTTGGCTCTTATCCTGGTCTACCTGTTCTCCATCATCGGCTTCCTTTTCTTAAAGGATGACTTCACCATGGAGGTGGACAGATTGAAAAACAGAACTCCAGTCACAG
Seq A exon
GTA
Seq C2 exon
GTAACGACGGGGTTCCCACTATGACCTTAACTTCCATGCTGGGAACCTGCCCTAAGGAAAACTGCTCACCCACGATCCCCTCTTCGAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053339-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.104
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(28.6=100)
A:
PF0052026=Ion_trans=FE(0.4=100)
C2:
PF0052026=Ion_trans=FE(13.7=100)
Main Inclusion Isoform:
ENSRNOT00000086465fB176
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGAGGTGGACAGATTGA
R:
GCAGTTTTCCTTAGGGCAGGT
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]