RnoEX0004520 @ rn6
Exon Skipping
Gene
ENSRNOG00000056767 | AC136588.3
Description
NA
Coordinates
chr14:85881775-85883646:+
Coord C1 exon
chr14:85881775-85881944
Coord A exon
chr14:85883257-85883405
Coord C2 exon
chr14:85883476-85883646
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTGGATCTCGTCTTTTACAGATA
3' ss Score
10.13
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTTGAAGAAATAACCAAAAAGCAGCCGGGTGTGGAATCAGAGGAACCAGAGGAACCAGAGAACCTGTGTCTTACGGTCGCTGAGTTTAATGACAACCAGTTGGTTTCCAAAAGGAACGGTGGAAAGACTGGGGAGCTATTTCCTGCTGAAGAGAAAGATGAGCTTCCCAA
Seq A exon
ATACTCTGCACATGCTCAGACTCAACTCTTGATCCGCAAACTCAGTCTTATATCTGCCTCGTTTAGGATGAACCTGACCTCCCCTTCCTTGCCTGGTACTTACAGTGGTTTACACCTAGTAGTAGATGCAGATGGAGACGAGCCGAAAG
Seq C2 exon
GAGTGTTCCTGACTCGTGGATAAAGGAAGCGAAGTCCAGTGAGAAGGAAGCATGGGGCCCCCCGGAGCCTGTGGTCACACCAGTATTTGAGGAGTCCCCTCCAGAAGCTGCTGGTCTGCTGCCGCTGAAGGATGGCCACCTTCTCACTAAAATGGATCCGGTTGAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056767_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=67=67%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAACCAAAAAGCAGCCGGGT
R:
ATACTGGTGTGACCACAGGCT
Band lengths:
247-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]