RnoEX0004527 @ rn6
Exon Skipping
Gene
ENSRNOG00000056767 | AC136588.3
Description
NA
Coordinates
chr14:85833940-85841769:+
Coord C1 exon
chr14:85833940-85834019
Coord A exon
chr14:85838583-85838619
Coord C2 exon
chr14:85841703-85841769
Length
37 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTTCTTTATCTTTAGAAG
3' ss Score
9.62
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GATGGCTGCATACCACATTCACACCACATCAAGGAAGACAACCAAGAGATGGAGGAAAACACAGATGACAAGCTGGGGAG
Seq A exon
AAGCAGATACTTATCCTGAATCTTACTCTAAAACAAG
Seq C2 exon
TTCCGCCCAAAGACGTAGTAACTCTGAGCCCACAGAAGTAGACGATGAACCTAGCTTCAGTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056767_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGCATACCACATTCACA
R:
TCGTCTACTTCTGTGGGCTCA
Band lengths:
123-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]