RnoEX0004553 @ rn6
Exon Skipping
Gene
ENSRNOG00000051254 | AC144674.2
Description
NA
Coordinates
chr13:79915833-79934336:+
Coord C1 exon
chr13:79915833-79915926
Coord A exon
chr13:79916630-79916735
Coord C2 exon
chr13:79934286-79934336
Length
106 bp
Sequences
Splice sites
3' ss Seq
TCATCTCCCTCCCACCTCAGGCT
3' ss Score
8.6
5' ss Seq
AGGGTATGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
GGCAGGATGTTAACAGGGATATGGACATAAAGATTGCTACTTTCTGGAAGGCTTTCTTGTTAGGACAGAGTCAGGCGAGCCGTGACAACAGCAG
Seq A exon
GCTCCAGGAGAGGGAGGACCTGACTTTAACATCCAAAGGAAGGAAGTGAGGTTCTGAAGGAGGTGCCCAGAAGCAGCTATCCCAAGTGGAGGTTTCTACTTCCAGG
Seq C2 exon
GATACATCTGGACCAAACAGAAAGGCTTGAGCATTGAGATGCCATGAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051254_MULTIEX1-3/4=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGGATGTTAACAGGGATATGG
R:
TCTCAATGCTCAAGCCTTTCTGT
Band lengths:
133-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]