RnoEX0004555 @ rn6
Exon Skipping
Gene
ENSRNOG00000057584 | AC229945.2
Description
NA
Coordinates
chr5:79922451-79955330:+
Coord C1 exon
chr5:79922451-79922673
Coord A exon
chr5:79953200-79953329
Coord C2 exon
chr5:79955152-79955330
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTTCTACCTTGGTCTCTCAGATG
3' ss Score
9.49
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTTTTCTGTTCTTTCTAATCTAGTCTTCCTTTCCCTGTCTTTCAGTGATCATCCTCCCACATCCTTTGATGTGGGAGAACTGCGGCTGGGCTGAGTTGTAAGGGATGCACTGCTGCAGAAGCCAGAGTCTGACCTCATCTCCACCTGGTCCAGGAGGGGAGACTGAGGGAAGAGCTTAGATTCAAAGCCAAGAACATCTTGGCAGGATGTGGCTTTTCAGGAG
Seq A exon
ATGATTCTTCCTTGGAGTTCAGGAGCTAATGCGTCAAGAGGACACTCAAGCAGTACTGGGAACAAGAGTCAACAACAATGGCTCATGGACCACATGAGTGAACCATCTTGGCAATAGAATCCAGCCCAAG
Seq C2 exon
GTCCTGGAACAAAAGACTGCTGATTTGGAAGTTGAGATTTCATATTCATCAGAGGCACAGAGGGAACTGAGGCATGACTCAAGGGATGTGATTGAGTCATAGCAGACAGAGACTCGTCAACCTTGTAAATGAAGTCATGCTTTGTCTGCAAACAGAGAAAGTACACATGCCTGGTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057584_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGATGTGGGAGAACTGCGG
R:
TCCCTTGAGTCATGCCTCAGT
Band lengths:
245-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]