RnoEX0004781 @ rn6
Exon Skipping
Gene
ENSRNOG00000027505 | Abca15
Description
ATP-binding cassette, subfamily A (ABC1), member 15 [Source:RGD Symbol;Acc:1305981]
Coordinates
chr1:190077342-190081946:+
Coord C1 exon
chr1:190077342-190077606
Coord A exon
chr1:190079490-190079617
Coord C2 exon
chr1:190081796-190081946
Length
128 bp
Sequences
Splice sites
3' ss Seq
GACTTTTACTCTCTCTACAGTTA
3' ss Score
9.28
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGGCGGAAGTTTGGGGCTTTAGTTACTGAGATAATCCTGATGCTTGCGTTCAGCATTGTGCTTTTGACAACACGCCACCTTCTTAGCATAAACAAGATGGAGTCCCTGCATTTTCCTGACCAACCTGTCGGTGCTGTTCCTTTCTTCTTCCGAGTCTCTGCCAACAGTTCTCGTCCTTGGGAGCTGGCTTATGTGCCTTCCAACATCACGGTGGTACACAATATTGTCGAAAATGTGAAAAAGGATTTAAACTTCCCTATGGCAG
Seq A exon
TTATAGGGTTTCCTTCAGAAAGTGATTTTGAAGATTACGCTAGGTCATCTGTCAACTCTAGAAATATTCTGGCTGCTATTGTGTTTGACCACAACTTCGCAAACAGTAGAGACCCTCTGCCAAAGAAG
Seq C2 exon
ATAAAATACAATCTGCGATTTAGTGATATTAAAAAGAACATACATGGTATGGCATATTATCAAGGGCACACCTGGCTTACAAAATTTCTCTTTCCACCTTTGCGTATTGTGGGACCCAGAAATCCACAGGAAGCAGATGGAGGCAGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027505_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(19.3=95.5)
A:
PF126982=ABC2_membrane_3=FE(9.5=100)
C2:
PF126982=ABC2_membrane_3=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGTCTCTGCCAACAGTTC
R:
TGTGGATTTCTGGGTCCCACA
Band lengths:
244-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]