RnoEX0004782 @ rn6
Exon Skipping
Gene
ENSRNOG00000027505 | Abca15
Description
ATP-binding cassette, subfamily A (ABC1), member 15 [Source:RGD Symbol;Acc:1305981]
Coordinates
chr1:190100308-190110086:+
Coord C1 exon
chr1:190100308-190100486
Coord A exon
chr1:190100859-190100927
Coord C2 exon
chr1:190109952-190110086
Length
69 bp
Sequences
Splice sites
3' ss Seq
GTCCTAAATTATTATTGCAGATA
3' ss Score
7.07
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
AAACTGGAATGAAATGGAATAACATATTCCTACCAACGGATTCAGACAGCCTTTTATTTACCTATGTGCTAGGAATGCTTTTAGTTGATGCTTTCATATATGGCCTTGTGGCCTGGTACATAGAAGCTGTCTTTCCAGGAGAGTACGGTGTGCCAAAGCCGTGGAACTTTTTCTTGATG
Seq A exon
ATATCTATAATTGTATGGGAGGAAACAATTCATGGGTAAGAGCTGGAAACTTACCAAACTGTACAAACG
Seq C2 exon
CACTCTTACTGGTTTGGAGAATCACGTCAACAAAAACCCGAAATAACCCAATTTTGTAAGAGAGTTGAAAGCAAGTATTTTGAAGTTGAACCAACTGATTTGACAGCAGGCATCCAGATCAAACACCTACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027505_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(8.8=65.0)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000037026fB296
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGTACGGTGTGCCAAAG
R:
TGTTTGATCTGGATGCCTGCT
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]