RnoEX0004795 @ rn6
Exon Skipping
Gene
ENSRNOG00000015783 | Abca16
Description
ATP-binding cassette, subfamily A (ABC1), member 16 [Source:RGD Symbol;Acc:1563534]
Coordinates
chr1:190224318-190241557:+
Coord C1 exon
chr1:190224318-190224435
Coord A exon
chr1:190229904-190230077
Coord C2 exon
chr1:190241376-190241557
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTGTAATTTCTTACTTGAAGCTC
3' ss Score
6.14
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
ATCGTGGAGGAGCCAATCTTGCGCTACAGCGACTGCAGCTTCATCTTCGTCTTCCTTACATGCTATGCCATTGCATCCATATGCTTTGCCTTTATGGTTAGCACGTTCTTCAGTAAAA
Seq A exon
CTCGTTTGGCTGCTTCTGCTGGAAACCTCCTATTTTTTGCCAGTTTCTTTCCCTATAACTTCATCTCTGAATACTATGGAATGTTGGACCTTACTACCAAGATAACTGCGTGTCTGAGTGCAAATGTTGCTTTGGCACTGGGGATTAATATCTTAATCAAGTTGGAAATACAAG
Seq C2 exon
AGATTGGTGTTAAATGGGACAACCTTTGGACACCAGCCAATCTTGAGGATAATCTCAACTTTGGCTATATGCTTGGAATGCTTTTGCTTGATGCTTTCTTATACAGCCTTGTTACCTGGTATGTAGAAGCTGTCTTTCCTGGACAGTGTGGTGTGCCTCAACCATGGTACTTTTTCATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015783_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(9.0=100)
A:
PF126982=ABC2_membrane_3=FE(13.4=100)
C2:
PF126982=ABC2_membrane_3=PD(9.3=65.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTGCAGCTTCATCTTCGT
R:
CACACCACACTGTCCAGGAAA
Band lengths:
244-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]