RnoEX0004937 @ rn6
Exon Skipping
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98274510-98277125:-
Coord C1 exon
chr10:98277035-98277125
Coord A exon
chr10:98275888-98276138
Coord C2 exon
chr10:98274510-98274649
Length
251 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTGTTTGTCTTTAGCCG
3' ss Score
8.68
5' ss Seq
CTTGTAAGC
5' ss Score
4.33
Exon sequences
Seq C1 exon
ACAGGAAAGTGTTCATCTCCAGGGGGAAGCTGAAGTGTGCAGGCTCATCTCTCTTCCTGAAGAAGAAATGGGGCGTTGGGTATCACTTAAG
Seq A exon
CCGTTTTCCACCAGTAGAGATGAAAAGCTGCCAGATGGAGTGAACCATCTAGACATTTGCAGAACAAGTTTGCCAACCCCACCTTCCAAGGATCCTTGAAGAACATTATACCAGATGCCCCTCATATTATCCAAAACATTTTCTCAAATGCATTTTATCACCAAAGGAATGGCAGTAGAGAGGGGGGAAACGTACTTTTAATTTAATTTCCTCAGTGGATTTCGATTCTTCTTGAAATACCAAGCACTCTT
Seq C2 exon
TTTGCAGCTGAAGGAAGTCTGTGTTCCGGAGAACATCACATCACTGGTGAAACAGCACATCCCTGAGGCCAAGCTGTCAGCTGAAAGGGAGAGGACACTTGTCTATACATTACCCTTAGAAACAACCTATAGATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040-'20-22,'20-21,21-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000005489fB317
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAAAGTGTTCATCTCCAGGG
R:
GGAAATCTATAGGTTGTTTCTAAGGG
Band lengths:
228-479
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]