RnoEX0005337 @ rn6
Exon Skipping
Gene
ENSRNOG00000007041 | Abcg2
Description
ATP binding cassette subfamily G member 2 [Source:RGD Symbol;Acc:631345]
Coordinates
chr4:88837178-88852794:+
Coord C1 exon
chr4:88837178-88837508
Coord A exon
chr4:88844226-88844299
Coord C2 exon
chr4:88852576-88852794
Length
74 bp
Sequences
Splice sites
3' ss Seq
AAACTCTTCTCCCTTCTCAGGTT
3' ss Score
9.76
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGTTAGTTTTCAGAGACTCATCAAAGAATTCACCTTCAGCCTCAACCAGAGTGCCTGGTTTGTTCACAGCCCAGTTTATGTAAGTGAGGTGACCTAGGGTGGAGCTCCTGGGTGGCCTTAGGATGGGCCTGGCCTCAGAAGGACCTAGTGATGAGAGATTTAAGACTTAGCTCCACCAATGGGCCTCTAAAAAAGGAAGAAGAGGGCTGGTGTTTCAGCTTTATAAAGCGTGTTACTCAGTAATACCTGAACAGAAAGATTCACTTGTCTGAGAAGAGGCCATCTCTCAGCTCTGCAGGAGAAAAGCTAACTGCTGTCTTGCTGAGGACAG
Seq A exon
GTTGAATATTTGGAGACATGTGAACTGAACTGAGAAGAACCAGATCAATTATAACTGCACATTGAGAGAAAACT
Seq C2 exon
AAAGGCATAGATCCTAAAGATGTCTTCTAGTAATGACCACGTGTTAGTACCGATGTCACAGAGAAACAAGAACGGCCTTCCTGGAATGAGCTCCAGAGGCGCGAGGACGCTCGCAGAGGGAGATGTGCTAAGTTTTCATCACATCACCTATCGAGTGAAAGTGAAGAGTGGCTTTCTAGTCCGGAAAACAGCTGAGAAAGAAATACTATCAGATATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007041-'6-5,'6-4,7-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.343
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0000522=ABC_tran=PU(2.6=6.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCTCTCAGCTCTGCAGGA
R:
TTAGCACATCTCCCTCTGCGA
Band lengths:
183-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]