RnoEX0005343 @ rn6
Exon Skipping
Gene
ENSRNOG00000030216 | Abcg3l1
Description
ATP-binding cassette, subfamily G (WHITE), member 3-like 1 [Source:RGD Symbol;Acc:1303294]
Coordinates
chr14:6505783-6513023:-
Coord C1 exon
chr14:6512941-6513023
Coord A exon
chr14:6508706-6509054
Coord C2 exon
chr14:6505783-6505872
Length
349 bp
Sequences
Splice sites
3' ss Seq
GACTTTCTGTCTGCCAACAGAAA
3' ss Score
9.85
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GTGATTATCATAGTCATACTGGCGGTGGTCGTGGGGACTGCTTTCCGTCTCCTGCAAAATGTTTGTACTGAACTCCAGATGAG
Seq A exon
AAAACTGGCAAAGAAAATGAGACTTGCAATGTACTTATCTTGAAAAATGGGAATATCGAGAGAACTGAAGATTTGAAGAACAATCATGCAAAATAAAAGAATGCAAGGATCGAAAGACAAGCACATGGTTCACTTACATGTGGAGCAATTCACCTCCAGGCAGCATGGCTGGCAGTGACAACCTCCAGAGGTGCTATGCACTGAGGAAACACACGTGACTTAATACTATACCACCTGATAAACCGGAGAAATAAGTTTTATTTTCTATTGAAGTGAATTATATTGAGCACACTCAATCCAGCAAATATACTCTGCACTTCAAAGTTTCTGAGACAACATTTCAAATGAG
Seq C2 exon
AGCTATCCTGATCCTCCTGCTCACTGGTTTCCAGTGCATCACAAGTGTGACTGCAGGGGAGCTCTTTGTGATTGACCAGGATCGCTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030216_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106119=ABC2_membrane=FE(12.8=100)
A:
NO
C2:
PF0106119=ABC2_membrane=FE(14.2=100)
Main Inclusion Isoform:
ENSRNOT00000079795fB384
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]