RnoEX0005346 @ rn6
Exon Skipping
Gene
ENSRNOG00000030216 | Abcg3l1
Description
ATP-binding cassette, subfamily G (WHITE), member 3-like 1 [Source:RGD Symbol;Acc:1303294]
Coordinates
chr14:6533322-6541171:-
Coord C1 exon
chr14:6541118-6541171
Coord A exon
chr14:6535311-6535444
Coord C2 exon
chr14:6533322-6533543
Length
134 bp
Sequences
Splice sites
3' ss Seq
ATTGCTGTACTTGTCAAAAGCCA
3' ss Score
1.92
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
CTCTGGGAAGAAGCCAGGGACTCTGTCGGAGGCTTCGGGTCCTTGAGCCGCTGG
Seq A exon
CCACAGGCCTTAGAGAAAAGGAAAGTTGCTGGGAAATTAAAGAAGTGGATGCCTCATCTGAATGTCCTGCTGTCCAATAGTTCCGACCTGTGGACTGAAGTACGTGTATCTGAGTACTGACAGAGATTGATTCA
Seq C2 exon
GAAGGAAGAACCTCTCAAGATGTCTTCCAGTAACGACCCCATTGTAATCCCAATGATAGAAAGACGTCAAGGTGACCTTCCCGAAACAAACACCAGTGACCCGGAGACACTGACTAAAGAGGCTGTGTTGAGTTTTCACAACATCAGCTACAGAGAAACAGTGCAGAGCGGATTTCCACTTCGTCAGCAGACACGTGTGATGGAAAGACTGTCGAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030216_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.485
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAAGCCAGGGACTCTGT
R:
TTCCATCACACGTGTCTGCTG
Band lengths:
254-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]