RnoEX0005351 @ rn6
Exon Skipping
Gene
ENSRNOG00000039890 | Abcg3l3
Description
ATP-binding cassette, subfamily G (WHITE), member 3-like 3 [Source:RGD Symbol;Acc:1564709]
Coordinates
chr14:6091439-6094495:+
Coord C1 exon
chr14:6091439-6091563
Coord A exon
chr14:6093857-6093972
Coord C2 exon
chr14:6094341-6094495
Length
116 bp
Sequences
Splice sites
3' ss Seq
AGCAGTTGTATCTCTTCCAGGCT
3' ss Score
6.03
5' ss Seq
ACGGTATAC
5' ss Score
4.72
Exon sequences
Seq C1 exon
ACATGAGCACACCAGTGGATACTACAGAGTGTCATCCTATTTCTTTGGAAAACTGCTGGCTGAGCTAATACCCAGGAGGCTGTTGCCAAGTATGATATTTACTCTTATAACATACTTCATAGCAG
Seq A exon
GCTCCCCAGATTCGGTTCCCAGCACACATCATTCGTTTGCTTTCAACAGCCCACAACTACAGCTGTAGAAGCTCTGATCCTCTCTTCTGACTTCCACAAGTGACTGCATACACACG
Seq C2 exon
GAATGAAAACAGGTGTCAAGGGTTTCTTCGTTACGATATTTACTGTCATGATGTTGGCGTCTTCCGCCAGTTCCCTGTCCCTATCGTTAGGAGCTGGAGAGAACACAGCTGCTCTACCAACGACTCTCATAACCATCTACTTTATGTTCATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039890-'21-19,'21-18,22-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106119=ABC2_membrane=FE(19.8=100)
A:
PF0106119=ABC2_membrane=PD(10.1=60.9)
C2:
PF0106119=ABC2_membrane=FE(24.1=100)
Main Inclusion Isoform:
ENSRNOT00000061267fB386
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGAGCACACCAGTGGATAC
R:
AGAGTCGTTGGTAGAGCAGCT
Band lengths:
252-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]