RnoEX0005572 @ rn6
Exon Skipping
Gene
ENSRNOG00000046958 | Abo
Description
ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase [Source:RGD Symbol;Acc:2307241]
Coordinates
chr3:4380455-4394428:-
Coord C1 exon
chr3:4394311-4394428
Coord A exon
chr3:4380953-4381026
Coord C2 exon
chr3:4380455-4380524
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTATATGTATGTCTTTTAGGAC
3' ss Score
10.92
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
CAGTAGGAGGCTCCGGGTGCCGGAGGGTCTGTGTTCCTGGGTGCTACTCCTCCCTGCCTGTATCCTTCGGGCGTTGAACTCGGGTGCTGCAGCAGAGCAATGAAGGATCTGCGGTTCG
Seq A exon
GACTATGTGGACTTGATTATGAGAACACATAACGTCGAGAGACATCGAAATCATCTGAAGTGTTGGGGGCATAG
Seq C2 exon
GAAGACTGAAATGCTACTCCCTTCATCTTGGAATCCTTCCCCTCACGGTGCTCGTCTTAGTCTTCTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046958_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000044775fB424
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGGTCTGTGTTCCTGG
R:
AAAAGAAGACTAAGACGAGCACCG
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]