RnoEX0005577 @ rn6
Exon Skipping
Gene
ENSRNOG00000056837 | Abr
Description
ABR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1306279]
Coordinates
chr10:64612493-64616753:-
Coord C1 exon
chr10:64616693-64616753
Coord A exon
chr10:64616244-64616418
Coord C2 exon
chr10:64612493-64612545
Length
175 bp
Sequences
Splice sites
3' ss Seq
CTTGGATGAGCACTCGGAAGGAA
3' ss Score
-9.01
5' ss Seq
ATGGTAACC
5' ss Score
5.31
Exon sequences
Seq C1 exon
GAACTCAAAGTGAAAGGACCCAAGGACTCTAAGGACAGCCACACATCAGTCACCATGGAAG
Seq A exon
GAAGCGGCTGCTTGATTCTGGAGGTTGTGCAGCAGCAGCCAGCAAGGTGGCCGAGTGGCTGGTCTGCTGAGGAGAGCCAGGAGCCTGGAGCAATGGCTGCAGGTCCCTGCTGCAAGGATAGAGGTTGCCATGGAAATCCTACTCATCATCCGCTTCTGCTGTGACTGCACCTATG
Seq C2 exon
CTCTGCTGTATAAGCCTATTGACCGAGTCACTCGGAGTACCCTGGTCCTGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056837-'23-14,'23-13,24-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.536 A=0.389 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(10.6=100)
A:
PF0062115=RhoGEF=PD(4.1=10.9)
C2:
PF0062115=RhoGEF=FE(9.0=100)
Main Inclusion Isoform:
ENSRNOT00000080703fB425
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTCAAAGTGAAAGGACCCA
R:
GTGCAGGACCAGGGTACTCC
Band lengths:
114-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]