RnoEX0005850 @ rn6
Exon Skipping
Gene
ENSRNOG00000003550 | Acbd6
Description
acyl-CoA binding domain containing 6 [Source:RGD Symbol;Acc:1305030]
Coordinates
chr13:73206214-73219683:+
Coord C1 exon
chr13:73206214-73206310
Coord A exon
chr13:73209956-73210064
Coord C2 exon
chr13:73219583-73219683
Length
109 bp
Sequences
Splice sites
3' ss Seq
TCGATGCGTTTTACCAGCAGCGA
3' ss Score
4.7
5' ss Seq
TTAGTGAGT
5' ss Score
5.79
Exon sequences
Seq C1 exon
GGAGGCATGGAAAGCCCTCGGCGACTCAAGCCCTAGCCAAGCAATGCAGGAATATATCGCGGCAGTTAAAAAACTAGATCCAGGATGGAATCCTCAG
Seq A exon
CGACTCCAGGATCTCTGTTTTGGTATTGATGATGTCAACTTTGATCACTTGGATAATGATGGCGTCTACCAGGTTTCCCTACCGAGAAGCTCCTGTTTCTTTATAATTA
Seq C2 exon
ATCTCCCTCATTTCATACAGAGCCTGTTAAACAACTCACATCATTGCTATTCTAAGTCATGCCTTTGCAGTCAAGCATTTGAAAGGTGATTGACTTTTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003550-'4-7,'4-6,5-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0088714=ACBP=PD(35.3=90.9)
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSRNOT00000004772fB465
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATGGAAAGCCCTCGG
R:
GAAAAAGTCAATCACCTTTCAAATGC
Band lengths:
194-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]