RnoEX0006179 @ rn6
Exon Skipping
Gene
ENSRNOG00000019180 | Acsl4
Description
acyl-CoA synthetase long-chain family member 4 [Source:RGD Symbol;Acc:69401]
Coordinates
chrX:113634866-113659944:-
Coord C1 exon
chrX:113659750-113659944
Coord A exon
chrX:113658495-113658568
Coord C2 exon
chrX:113634866-113634909
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTTGTGCTTGCAGCAA
3' ss Score
9.87
5' ss Seq
CAGGTCAAG
5' ss Score
2.98
Exon sequences
Seq C1 exon
GCCACGCCTCTTCTGGCTGTCCGGGCTGCGCGCGCGTCGCTGCGGCTCTCTTTTTTTCCACTGGTCGCCGAGGCTCGCCCCTCCTTGCAAGGCTGCTCCAGAGCTAGCGGGCACGCGAGCTCCTCTCCGGGAGCTTCCTTCCCCGAAAGGCCGGGACCCAGTGGCGGACTCGTGGTGAGCGAGGCAGCACCTTCG
Seq A exon
CAAGCAAGGCTTTCCGATATTCTCAATGCGTGAAGCAGCAAGTGGATAGCAGTTACAGTGGTGCTACTGAGCAG
Seq C2 exon
ATCCCAGGAGATTGACCTGTTCTTAAAAGTGAAAGAAGAAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019180_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTCCACTGGTCGCCGAG
R:
TCACTTTTAAGAACAGGTCAATCTCC
Band lengths:
175-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]