RnoEX0006453 @ rn6
Exon Skipping
Gene
ENSRNOG00000005033 | Acvr1
Description
activin A receptor type 1 [Source:RGD Symbol;Acc:620200]
Coordinates
chr3:44522892-44552277:-
Coord C1 exon
chr3:44551648-44552277
Coord A exon
chr3:44538306-44538384
Coord C2 exon
chr3:44522892-44522988
Length
79 bp
Sequences
Splice sites
3' ss Seq
ATTATTGACACTTTTCAAAGGCT
3' ss Score
3.28
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
TGTTGCTGCCTGGTTATCACAGCTCCAGACACTCATTGGCCGAGCGTTCCGCAGCCACTTCCTCCTTCCTCCTCCTCCCGCTCCTCCCGCTCCAGCTCCCGGTCGCCGCCGCCGCCGCCGCCCCCAAGCGCTGGGGGAACTTTGCTGCCGCCGGCTCCCCGCCGCCCCCAGCCGAGCCCCGCGCCGCCGCAAGTTTCCTCCGCCCTCCTCCCCGCCCTCCGCCTCCCGCCCCGCGTCAGCCGTCTCCCCGGCTCCAGCCCGGTGCCTGCTGCCAGCCTGCGCCCCGGCCCCGTGGCCGCCAGCCTCCCGCCCCGCGCCGCGCCGCTCTGCGCTCCGCCGCCGCCGCCCGGGCCACCGGCCCGCGGCCCGCGGAGTTCCGGGCTCCACGCCGGCTGCAGCGCCCCGCCCCGCCCCGCGCCTCCCGCGCCGCCCTGCAGCTCCCGGCCGCCTCGCGCTCTCCGCCTCCCCGGGTTCAGCACCCGGCCGCCGCTGGACCAGAG
Seq A exon
GCTGCATTAAGTGGGATATGCCACCCGTGATTCTGACAGCCGTGACTGCGTGGAGCCTGCTCCAGAACTCTCCACAGAG
Seq C2 exon
GAGCAAAGGAGCTGCCCTCTGTGTCTCCCCGCCCTTCAGCGAGAGTCTGGAAAGAGAACCGAGGTGCTACTGCAGTGGATGAGTAGAGAAGAGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005033_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCCGGGTTCAGCAC
R:
AGACTCTTCTCTACTCATCCACTGC
Band lengths:
135-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]