RnoEX0006455 @ rn6
Exon Skipping
Gene
ENSRNOG00000005033 | Acvr1
Description
activin A receptor type 1 [Source:RGD Symbol;Acc:620200]
Coordinates
chr3:44464697-44483915:-
Coord C1 exon
chr3:44483842-44483915
Coord A exon
chr3:44467067-44467123
Coord C2 exon
chr3:44464697-44464960
Length
57 bp
Sequences
Splice sites
3' ss Seq
CATTTACCTCTTCCTTACAGCAC
3' ss Score
9.29
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
TTATACAATGGTCGATGGAGCAATGATCCTTTCTGTGCTAATGATGATGGCTCTCCCTTCCCCGAGTATGGAAG
Seq A exon
CACTAACTCTTCATTCCCCAACCCAGTATCAGCCAGATGTACTTCCCAGTACCTTAG
Seq C2 exon
ATGAGGAGCCCAAGGTCAACCCGAAGCTTTACATGTGTGTGTGTGAGGGCCTCTCCTGCGGGAACGAGGACCACTGTGAGGGCCAGCAGTGTTTTTCCTCCCTGAGCGTCAATGATGGCTTCCGCGTCTACCAGAAGGGCTGCTTTCAGGTCTATGAGCAGGGGAAGATGACGTGTAAGACCCCGCCGTCGCCTGGCCAGGCTGTGGAGTGCTGCCAAGGGGACTGGTGCAACAGGAACGTCACGGCCCGGCTGCCCACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005033_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.450 C2=0.041
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0106418=Activin_recp=WD(100=84.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCCTTCCCCGAGTATGG
R:
GGAAGCCATCATTGACGCTCA
Band lengths:
147-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]