RnoEX0006456 @ rn6
Exon Skipping
Gene
ENSRNOG00000005033 | Acvr1
Description
activin A receptor type 1 [Source:RGD Symbol;Acc:620200]
Coordinates
chr3:44500847-44522930:-
Coord C1 exon
chr3:44522892-44522930
Coord A exon
chr3:44514264-44514374
Coord C2 exon
chr3:44500847-44501118
Length
111 bp
Sequences
Splice sites
3' ss Seq
GGTCTTCTTGCTGCTTCCAGGCC
3' ss Score
7.84
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
CCGAGGTGCTACTGCAGTGGATGAGTAGAGAAGAGTCTG
Seq A exon
GCCTACCTCCTAATATCTCCATGCTGGTGATGAGATTTTAGCATGCAAATGTCCTGGAGGCCACAAACATTCAGACCAGGTCATTGACTGAAGAAACATTCATAATTCAGT
Seq C2 exon
CATCCAGTGCTGGTGAGCTTGTCTGGCTATAGGGAGCCTGCTGGGGGAAACTTACAGCTTCAGAAGACTCCTGGAGAGCCTCTCCCTCCACACTCTCCCTTTGAGCAGTCAGTGCCTCTCTGCTGGAGAACCTGTGCTGGGTGTGCCCCAGAGCTGGCTTTGACTGTAGCCTGTCAGGCTCTCCCTGGACCTCACGGAACAGCATTGCCAGCCACACGGCTTCCAACAAATCACCTCTTTTCATGCTGTTTGGCACAGATCGAATCTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005033_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTACTGCAGTGGATGAGTAGA
R:
CTGGCAATGCTGTTCCGTGAG
Band lengths:
244-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]